Satellite measurements of both cloud vertical structure and cloud‐radiative forcing have been used to show that during the strong 1997/98 El Niño there was a substantial change in cloud vertical structure over the tropical Pacific Ocean. Relative to normal years, cloud altitudes were lower in the western portion of the Pacific and higher in the eastern portion. The reason for these redistributions was a collapse of the Walker circulation and enhanced large‐scale upward motion over the eastern Pacific, both caused by the lack of a zonal sea surface temperature gradient during the El Niño. It is proposed that these cloud structure changes, which significantly impact satellite measurements of the tropical Pacific’s radiation budget, would serve as one useful means of testing cloud‐climate interactions in climate models.