Estimates of sources/sinks of carbon dioxide (CO₂) at the Earth's surface are commonly made using atmospheric CO₂ inverse modeling, terrestrial and oceanic biogeochemical modeling, and inventory-based studies. In this study, we compare sea-air CO₂ fluxes from the Time-Dependent Inverse (TDI) atmosphere model and the marine Biogeochemical Elemental Cycling (BEC) model to study the processes involved in ocean carbon cycling at subbasin scales. A dust generation and transport model, based on analyzed meteorology and terrestrial vegetation cover, is also used to estimate the interannual variability in dust and iron deposition to different ocean basins. Overall, a fairly good agreement is established between the TDI and BEC model results for the net annual patterns and seasonal cycle of sea-air CO₂ exchange. Sensitivity studies with the ocean biogeochemical model using increased or reduced atmospheric iron inputs indicate the relative sensitivity of air-sea CO₂ exchange. The simulated responses to changes in iron inputs are not instantaneous (peak response after ∼2−3 years). The TDI model derived seasonal cycles for the Southern Ocean (South Atlantic) are better matched by the BEC model by increasing (decreasing) iron inputs through atmospheric aerosols. Our results suggest that some of the interannual variability in TDI model air-sea CO₂ fluxes during the past decade may be explainable by dust variability that relaxes/increases iron limitation in high-nitrate, low-chlorophyll (HNLC) ocean regions.