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AGU: Journal of Geophysical Research, Biogeosciences

 

Keywords

  • Atacama Desert
  • microbial diversity
  • anhydrobiology

Index Terms

  • Biogeosciences: Biodiversity
  • Biogeosciences: Life in extreme environments
  • Biogeosciences: Microbiology: ecology, physiology and genomics
Abstract
Cited By (11)
 

Abstract

JOURNAL OF GEOPHYSICAL RESEARCH, VOL. 112, G04S17, 9 PP., 2007
doi:10.1029/2006JG000311

Bacterial diversity in hyperarid Atacama Desert soils

Stephanie A. Connon

Jet Propulsion Laboratory, Pasadena, California, USA

Elizabeth D. Lester

Jet Propulsion Laboratory, Pasadena, California, USA

Hannah S. Shafaat

Jet Propulsion Laboratory, Pasadena, California, USA

Donald C. Obenhuber

Jet Propulsion Laboratory, Pasadena, California, USA

Adrian Ponce

Jet Propulsion Laboratory, Pasadena, California, USA

Surface and subsurface soil samples analyzed for this investigation were collected from the hyperarid Yungay region in the Atacama Desert, Chile. This report details the bacterial diversity derived from DNA and PLFA extracted directly from these extremely desiccated soils. Actinobacteria, Proteobacteria, Firmicutes and TM7 division bacteria were detected. Ninety-four percent of the 16S rRNA genes cloned from these soils belong to the Actinobacteria phylum, and the majority of these were most closely related to the genus Frankia. A 24-hour water activity (aw) time course showed a diurnal cycle that peaked at 0.52 in the early predawn hours, and ranged from 0.01–0.08 during the day. All measured water activity values were below the levels required for microbial growth or enzyme activity. Total organic carbon (TOC) concentrations were above the limit of detection and below the limit of quantification (i.e., 200 μg/g < TOC < 1000 μg/g), and phospholipid fatty acid (PLFA) concentrations ranged from 2 × 105 to 7 × 106 cell equivalents per gram of soil. Soil extracts analyzed for culturable biomass yielded mostly no growth on R2A media; the highest single extract yielded 47 colony forming units (CFU) per gram of soil.

Received 15 September 2006; accepted 17 April 2007; published 6 September 2007.

Citation: Connon, S. A., E. D. Lester, H. S. Shafaat, D. C. Obenhuber, and A. Ponce (2007), Bacterial diversity in hyperarid Atacama Desert soils, J. Geophys. Res., 112, G04S17, doi:10.1029/2006JG000311.

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