Significantly older ¹⁴C ages by 2500–7900 years are found for sedimentary total organic carbon (TOC) when compared to ages of codeposited surface-dwelling foraminifera in the southern Okinawa Trough. This age discrepancy increases with rising sea level since the Last Glacial Maximum. A progressive shift in TOC δ ¹³C toward more negative values with rising sea level reflects an increasing fractional contribution of terrestrial organics (soil organics, plant debris, and/or fossil organics) to the buried organic pool. Organic matter previously stored on the East China Sea shelf during sea level lowstand and riverine material from Taiwan may be the sources that cause the δ ¹³C_TOC to shift to more terrestrial values. During the Holocene when sea level is above −40 m, δ ¹³C_TOC values stabilize within a narrow range (−22.3 to −22.8‰) while age discrepancies continue to increase and less chemically weathered sediments are deposited. The increase in age discrepancy between TOC and foraminifera in the Holocene may be due to a wetter climate that drove higher rates of physical weathering on Taiwan and greater transport rates of fossil organic C-bearing lithogenic sediment to the ocean. The climate impact on the relative delivery of fossil and nonfossil TOC in depositional settings influenced by fluvial sources should be considered in interpretations of sedimentary C isotope records.